Thursday, August 31, 2006

For all you mtDNA fans

As you know, I am very new at creating cladograms showing the Y-mutation distances between our Project members, and very much a novice at interpreting them.   Well, now we may all be in trouble for I'm beginning to discover the rudiments of creating cladograms for our mtDNA participants.   It requires that both the HVR1 and the HVR2 regions have been tested, which is probably a good thing since we only have four that have done both.   Here's my cladogram for their markers:
The participants are identified by kit numbers with their haplogroup and all the data may be seen on the Project mtDNA Test Results page.

Discretion suggests that I just leave it at that for now rather than attempt to interpret whatever meaning there is in this diagram.   --   Well, maybe I'll take a little shot at it.   Actually, to be fair, it may be more an observation than an interpretation.   It appears to me that if you follow the markers on all the legs between any two participants, all the marker 'differences' will be listed.   That is, every marker listed, one of the two participants has and the other does not have.

Wednesday, August 30, 2006

Notable Berrys

After yesterdy's flurry of activity there's not much going on on the DNA front today so I thought it might be a good time to mention some notable Berrys.   Some I knew of, some I happened across and some I searched for.   I'm sure many of you could provide me with others.   Here are the ones I've come up with:

Rex Berry - football player
Clarence Jackson Berry - Klondike Prospector
Martha McChesney Berry - educator
Halle Berry - movie star
Thomas Matthew Berry - Governor, SD
Jonas Arthur Berry - baseball player
Alan Kent Berry - baseball player
Sean Robert Berry - baseball player
Charles Francis Berry - baseball player
Raymond Emmett Berry - football player
Robert Chadwick Berry - football player
Nathaniel S. Berry - Governor, NH
James Henderson Berry - Governor, AR; US Senator
Jennifer Berry - Miss America 2006
Justin Berry - child internet porn star
Charles Edward Anderson "Chuck" Berry - Rock and Roll pioneer
Brian Joe Lobley Berry - Geographer, Social Scientist, Educator
The Province of Berry - France
Richard James Arthur Berry - Anatomist, Neurologist, Anthropologist
Samuel O. Berry - Murderer, Robber
Wendell Berry - Novelist, essayist, poet, professor, cultural critic and farmer.
Hunter Berry - fiddler, Rhonda Vincent and the Rage
David S. Berry - 9/11 victim
Joseph J. Berry - 9/11 victim
Addendum - (from your suggestion)
Kenneth Ronald Berry - TV and movie actor

Tuesday, August 29, 2006

New results

Several new results were posted at FTDNA today.   William Martin, #73, has his first 12 markers and is haplogroup R1b1.   Alas, no matches.   Michael Dwain, #68, received markers 13 - 37.   Still no matches (turns out he's no. 16 on the 'main stem' cladogram, below).   And Walter, #14, received his 26-37 markers.   He is the 9th member of the Augusta/Washington family with 37 markers and their cladogram is getting interesting, but confusing.

In addition, Jonathan, #12, a member of the Culpeper Co. Berry family, has ordered his 25-67 upgrade.   

Okay, now to the cladograms:This is a cladogram of all 37 marker tested Berrys with the relative genetic distances being fairly accurately portrayed with the exception of the section of the long leg that had to be cut out to make the Berry universe fit on the page.

And here's the 'expanded' Augusta/Washington Berry family shown in the upper left, above:It's beginning to take on a three-dimensional shape.

Here's the main stem:Each of the yellow circles represents a person except no. 1 which is the four identically haplotyped Benton Co. Berrys.

Monday, August 28, 2006

More emigration notes

I'm really bummed that I have this handwritten note (my handwriting) and I don't know where it came from!   Here it is anyway:

Scottish Emigration to America

Lowland Scots (from Lowlands directly to America
1707-1770s mostly townsmen & small farmers.   mostly to southern colonies and Pennsylvania but some to areas of New York that are now Vermont.

Ulster Scots (from Lowlands --> Ulster --> America)
1717-1775
        1st wave    1717-1720   to New England via Boston
2d wave 1725-1729 primarily middle colonies of Pennsylvania,
Maryland, New Jersey & Delaware.
3rd wave 1730-1768 Pennsylvania down to Virginia and the Carolinas.

Highland Scots (from Highlands directly to America)
1730s-1850s
        1730s      to North Carolina and New York
1749-1775 mostly to Cape Fear, North Carolina
1780-1850 entire eastern seaboard due to the clearances.

ADDENDUM:  POSTED November 25, 2006 at 1:15 PM:     Carol Vass says that these notes are from The Scotch-Irish: A Social History by James G. Leyburn which she recommends very highly.

Well, I've also been messing around with the cladograms and thought this one might be of interest.   This one shows all the Berry participants who have tested to 37 markers.   For those that belong to a family, I was able to identify the families they were in.   Do not be confused by this.   Only the people close enough together to form a 'Family' are related within a genealogical time frame.   I expect we are all related, and this chart suggests as much, but long before the adoption of surnames.

Network diagrams created using Phylogenetic Network software from Fluxus Technology and using the Median Joining method as described by Bandelt H-J, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48

Saturday, August 26, 2006

Orange Co., NC Berrys

O.K., let's talk today about the Orange Co., NC Berrys, so named because the line's earliest known ancestor, Robert Berry, spent much of his life, and died, in that locale.   It is interesting that four of the five members of that family are able to trace their male ancestry back to Robert.
You will notice that Jeffery is only marked 'probable'.   This merely indicates that although his markers match, as can be seen below, he has only tested 12 markers which, in my opinion, are not enough to 'prove' a relationship.

Here's their cladogram:

I am very much a novice at cladogram interpretation so please take what I have to say about them with a very large grain of salt.   With that caveat, it looks to me like Billy should be looking for his John, 1815-1862, to be a brother to Dane's Robert, 1812-1870, and a son of David J., because, to me, the cladogram indicates that Dane's line passes right through Billy's ancestor with one additional mutation.   It also appears to me that Wiley may have the ancestral haplotype.   But what do I know?

Here's some more Orange Co. Berrys information, first their actual markers:
Followed by their Distances and TMRCA:


Network diagrams created using Phylogenetic Network software from Fluxus Technology and using the Median Joining method as described by Bandelt H-J, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48

Friday, August 25, 2006

My first cladograms!

Yes, I know.   I've talked about and had cladograms on before, but they weren't mine.   I was able to present them through the generosity of Colleen Fitzpatrick of Forensic Genealogy.   Actually, I was only finally able to learn to do these with her help, again.   Thanks, Colleen.

The difficulty is that the Network application that generates them is a Windows or DOS only program.   I've been a Mac person since 1984 and have never before had to go over to the dark side.   But I wanted to be able to generate my own cladograms so I bought a copy of iEmulator which emulates a PC on my Mac (boy, is it slow!), sort of stumbled onto how to get it and my Mac to talk to each other so I could exchange files, and here we are.

Let's talk about the Culpeper Co. Berrys.   I'm not going to be able to offer any great insights because I don't know their line that well.   But let's just put out there what we do know and see if anything hits us in the face.

You will recall that we have six members from that family, Brent, #4, Jonathan, #12, Richard, #16, David, #57, Harold, #62 and Edward, #71.   All have tested at least 25 markers and four have tested 37.

Here are their yAncestrys:
Here are their markers and distances:
and here are their cladograms:The small red circle (or diamond, in some instances) with 'mv1' beside it is a 'median vector'.   According to Colleen, "A median vector is a hypothetical person who either hasn't joined the group yet or whose haplotype died out because he didn't have sons.   The software needs to include these to be able to join all the existing members in the most efficient (maximum parsimony) way."

Hm-m-m-m-m.   Harold and Edward both have a paper trail to a common ancestor seven generations back.   Logic would suggest that maybe they ought to be closer together in the cladograms.   But then, maybe logic isn't in play here. Hm-m-m-m-m.

Network diagrams created using Phylogenetic Network software from Fluxus Technology and using the Median Joining method as described by Bandelt H-J, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48

Thursday, August 24, 2006

Upgrades

It must be the alignment of several solar bodies, or perhaps the dawning of the Age of Aquarius (no, that's not until 2680 A.D.), or perhaps just 'I can't stand waiting any longer'.   Whatever the reason, several Augusta/Washington Co. Berrys have taken the plunge to upgrade to 67 markers.   Jim Berry,#7, Charles Berry,#27, and John Edward Berry, #55 are all moving from 37 markers to 67 markers with the first two already having been given an estimated results date of Oct. 9.   We'll see.

Any more takers?

For any of you who may be interested, here are the Berry tests presently in the lab with FTDNA and their estimated completion dates:

Kit Product Test Name Batch Est. Result
Date
13030 Y-Refine37to67 Y-DNA38-47 Markers James Leon Berry 167 10/09/2006
13030 Y-Refine37to67 Y-DNA48-60 Markers James Leon Berry 167 10/09/2006
13030 Y-Refine37to67 Y-DNA61-67 Markers James Leon Berry 167 10/09/2006

16791 Y-Refine25to37 Y-DNA26-37 Markers Walter Gorton Berry 162 09/06/2006

22287 Y-Refine37to67 Y-DNA38-47 Markers Charles Redmon Berry 167 10/09/2006
22287 Y-Refine37to67 Y-DNA48-60 Markers Charles Redmon Berry 167 10/09/2006
22287 Y-Refine37to67 Y-DNA61-67 Markers Charles Redmon Berry 167 10/09/2006

22442 Y-Refine25to67 Y-DNA38-47 Markers James Dennis Berry 166 10/02/2006
22442 Y-Refine25to67 Y-DNA48-60 Markers James Dennis Berry 166 10/02/2006
22442 Y-Refine25to67 Y-DNA61-67 Markers James Dennis Berry 166 10/02/2006
22442 Y-Refine25to67 Y-DNA26-37 Markers James Dennis Berry 166 10/04/2006

26075 Y-Refine25to67 Y-DNA38-47 Markers Walter Michael Berry 167 10/09/2006
26075 Y-Refine25to67 Y-DNA48-60 Markers Walter Michael Berry 167 10/09/2006
26075 Y-Refine25to67 Y-DNA61-67 Markers Walter Michael Berry 167 10/09/2006
26075 Y-Refine25to67 Y-DNA26-37 Markers Walter Michael Berry 167 10/11/2006

37201 DeepSNP-R1b DSNP-R1b Brian Joe Lobley Berry149 06/09/2006

50278 DeepSNP-R1b DSNP-R1b Keith Thomas Berry 144 05/01/2006

64855 Y-DNA67 Y-DNA61-67 Markers Scott Enfield Berry 159 08/23/2006

65864 Y-DNA37 Y-DNA13-25 Markers Michael Dwain Berry 162 09/15/2006
65864 Y-DNA37 Y-DNA26-37 Markers Michael Dwain Berry 162 09/15/2006

67238 Y-DNA67 Y-DNA38-47 Markers Edward Jay Berry 161 09/06/2006
67238 Y-DNA67 Y-DNA48-60 Markers Edward Jay Berry 161 09/06/2006
67238 Y-DNA67 Y-DNA61-67 Markers Edward Jay Berry 161 09/06/2006

67852 Y-DNA12 Y-DNA1-12 Markers William Martin Berry 163 09/08/2006

69315 Y-DNA37 Y-DNA13-25 Markers Norman Berry 165 10/06/2006
69315 Y-DNA37 Y-DNA26-37 Markers Norman Berry 165 10/06/2006
69315 Y-DNA37 Y-DNA1-12 Markers Norman Berry 165 09/22/2006

69491 Y-DNA37 Y-DNA13-25 Markers Robert Leo Berry 167 10/20/2006
69491 Y-DNA37 Y-DNA26-37 Markers Robert Leo Berry 167 10/20/2006
69491 Y-DNA37 Y-DNA1-12 Markers Robert Leo Berry 167 10/06/2006

69605 Y-DNA37 Y-DNA13-25 Markers C. E. Berry 165 10/06/2006
69605 Y-DNA37 Y-DNA26-37 Markers C. E. Berry 165 10/06/2006
69605 Y-DNA37 Y-DNA1-12 Markers C. E. Berry 165 09/22/2006

Wednesday, August 23, 2006

Partial results

New Y-DNA1-12 results are in and posted for Michael Dwain Berry, #68.   The balance of his 37 marker results are not 'expected' until Sept. 15, but I believe today's results were early.   Alas, Michael matches no one already tested.   He represents, as near as I can figure, the 37th separate and unrelated Berry family tested!   He also represents the 44th unique Berry haplotype tested and I used to think that that meant 44 families until I finally realized that some related families do have differences of one marker at the 12 marker test, which is what I was basing my family count on.

And a new member!   Michael Curtis Berry will be #78.   As soon as I hear back from him with his yAncestry line I'll get it posted and give anyone who looks like they might be related a 'heads-up'.


This may be of interest to some:
Courtesy Global Warming Art.

It should concern all of us.

Tuesday, August 22, 2006

Albion's Seed - not a book review

This book is not an easy read.   Unlike my usual murder mystery, fantasy or light biography, this is a history/anthropology book authored by David Hackett Fischer.   It is a learned treatise.

Albion's Seed is subtitled, "Four British Folkways in America".   The author's thesis is that "four British folkways in early America created an expansive pluralism which became more libertarian than any single culture alone could be.   Together they became the foundation stones of a free society in the United States."

His four folkways are:

East Anglia to Massachusetts.     *The Exodus of the English Puritans, 1629-1641*
            About 60% of the roughly 21,000 emigrants who came to Massachussetts during this period came from the nine eastern counties of Britain, namely Norfolk, Suffolk, Essex, Hertfordshire, Cambridgeshire, Huntingdonshire and Lincolnshire - plus parts of Bedfordshire and Kent, and brought with them much of the Puritan 'ways' of those areas.

The South of England to Virgina.     *The Migration of Indentured Servants and                                                                   Distressed Cavaliers, 1642-1675*
            Fischer's "distressed cavaliers" were the younger sons of eminent English families, largely Royalist, who became the 'first families of Virginia' much responsible for the establishment of their Anglican 'ways'.   More than 75% of the immigrants of this period, however, came as indentured servants.   The migration to Virginia was largely from a broad region in the south and west of England.

North Midlands to the Delaware.     *The Friends' Migration, 1675-1725*
            Fischer estimates that as many as 23,000 colonist moved to the Delaware Valley during the forty years from 1675 to 1715, the majority of whom were either Quakers or Quaker sympathizers.   Quakers came from every part of England but drew heavily upon the North Midlands, especially the counties of Cheshire, Lancashire, Yorkshire, Derbysire and Nottinghamshire, bringing with them their Quaker 'ways' of equality, order and reciprocal liberty, all grounded in the golden rule.

Borderlands to the Backcountry.     *The Flight from North Britain, 1717-1775*
            Through this period at least 150,000 immigrants originated in northern Ireland, 75,000 from the south and west of Scotland and more than 50,000 from the north of England.   These Scots-Irish borderers arrived mainly through the ports of Philadelphia and Newcastle and migrated from there on into the American backcountry and settled largely in the region now known as Appalachia.   They brought with them, and maintained, a strong sense of  'clan' and the principle of lex talionis, the rule of retaliaton, which held that a good man must do right in the world, but when wrong is done to him he must punish the wrongdoer himself  by an act of retribution that restores order and justice in the world.   They also brought with them the concept of  'natural liberty', described as 'elbow room' which advocated minimal government, light taxes and the right of armed resistance to authority in all cases which infringed liberty.

            Of course, these weren't the only cultures making up British America.   The Dutch occupied much of the Hudson Valley (New Netherland).   An amalgam of Caribbean, French, African and English elements made up the culture of the coast of South Carolina.   And Highland Scots populated North Carolina's Cape Fear Valley.

            I came to the conclusion from reading this book that if it weren't for the influence of the Quaker 'ways' on the fabric of our society, we would have become a much more mean-spirited nation.   I wonder what explains our recent history?

Monday, August 21, 2006

Over the weekend

Walter Michael Berry, #34, has ordered his 25 marker test refined to 67 markers.   He is part of the five member 'Berry Plain' Berry family group in the Project.   Craig, #33, has tested 12 markers; Jesse, #21, and Todd, #72, have tested 37 markers; Dennis, #28, and now Mike will have tested 67 markers.   When those results are in we will have four in that group that we can compare at 37 markers.

Kathleen West, kit #41261, has just joined the Project.   Kathleen has full sequence mtDNA results of HVR1 16519C, and HVR2 73G, 263G, 309.1C, 315.1C, placing her in haplogroup H*.   I've written her but as yet have not learned her connection to the Berry family.

Saturday, August 19, 2006

New website feature

I apparently have too much time on my hands.

It seemed to me that since six of our Berry Family DNA participants have had their haplogroups confirmed by SNP testing, perhaps some would be interested to see the results of those tests and the depth to which the haplogroup was tested.   In other words, how deep the clade?

To this end, those confirmed haplogroups have been shown in red on the yResults page and are themselves a link to a (somewhat) explanatory SNP results page for that individual.   To make it a little easier to find, haplogroups have been confirmed for participants numbers 7, 30, 42, 49, 54 and 63.

Friday, August 18, 2006

More new results.

More new results today!   Now we have 37 markers each for Edward Berry, #71, and Todd Berry, #72.   They continue to be confirmed in their Culpeper Co. and Berry Plain family groups, respectively.   Edward with a distance of 2 from David Herbert, #57, and a distance of 3 from Brent, #4, and Harold Orville, #62;   and Todd with a distance of 3 from Jesse Thomas Berry, #21, the only other Berry Plain Berry to test to 37 markers.

I'm pleased to see that both have uploaded their results to ySearch.   You all should be aware that you need to do it again whenever new results come in.   Results, unfortunately, don't upload automatically even though you've chosen to upload them in the past.   If you have mitochondrial DNA test results, you should also upload them to the mitosearch database.   Same simple procedure.   Just click the upload link on your FTDNA personal pages.   Your mitosearch ID# will be the same as your ySearch ID#.

When Edward's 67 marker results arrive (expected early next month) he will join only Brian, #49, having tested to 67 markers in our Project although 67 marker results for James Dennis, #28, and Scott Enfield, #66, are in the pipeline, due early October and later this month, respectively.

I have previously written about the case for more markers in another context, but just came across this contribution by Orin Wells, of The Wells Family Research Association, to the the Genealogy DNA list:   "Bottom line is in my view 12 markers are still pretty worthless unless your objective is to prove that there is no connection and that 25/26 markers is probably OK IF you are dealing with the same surname AND you nave credible genealogy connecting the two testees.   Otherwise, if you can not find the connecting genealogical records I would advise going to 37/43 markers depending on the testing company."

Thursday, August 17, 2006

Sense of the hiatus - Augusta

O.K., it seems to be another slow DNA day so I'll take the opportunity to tell you about Augusta, the second half of my recent hiatus.   Unfortunately, my Augusta is a week long music workshop so I didn't have much time to get photos and videos.

Some of you may recall that 'Augusta' is really the Augusta Heritage Center on the campus of Davis & Elkins College in Elkins, WV.   They present a Dulcimer week in April, an Old Time week in October, and five weeks during the summer from July to early August of heritage music, dance and crafts of all kinds, as you can see by the link above.

Here's the schedule for this year's Old Time Week:

This is Halliehurst Mansion, built in 1890 by Senator Stephen B. Elkins as a summer home, and now the scene of many summertime night jams on its extensive porches.
And here are samples of three of them.












The fiddler back in the corner in the last two clips is my fiddle teacher, Dave Bing, a really nice guy and a great teacher.

A couple of the 'Old Masters' afternoon presentations were two of my favorite people, Lester and Linda McCumbers. Here's Lester, an 86 year old fiddler from Calhoun County, playing Yew Piney Mountain.





And here's his wife, Lindy.






You all should come.

Wednesday, August 16, 2006

new DNA stuff

New results today!   25 markers each for Edward Berry, #71, and Todd Berry, #72.

As expected, Edward is confirmed as a member of the Culpeper Co., VA Berry family with distances at 25 markers of zero from Jonathan, #12, and David Herbert, #57, and one from Brent, #4, Richard Treemond, #16, and Harold Orville, #62.

Todd, on the other hand, is confirmed as a member of the Berry Plain Berrys.   Don't know whether his research was leading this direction or not.   He is a 25 marker distance of two from Jesse Thomas, #21, James Dennis, #28, and Walter Michael, #34.

Tuesday, August 15, 2006

Sense of the hiatus - Clifftop

It's a slow DNA day so I thought I'd like to give you all a sense of how much fun I'm having and how you could, too. I'm going to post some photos and video clips from the two events I did on my last hiatus, Clifftop and Augusta.

While we're at Clifftop we stay at nearby Babcock State Park.   Here's our cabin.

And here's a night visitor.





Others stay right on the grounds of Camp Washington-Carver, formerly a 4-H camp for African-American youth.


You'll recall that Clifftop is the Appalachian String Band Music Festival.   Here's Myra with her sister, Amanda, and Ruthie and Josh, on stage.






and some others.




Old-time musicians seem to be largely anti-war.




Vendors.
Daytime jams




and night jams

just plain old singing.





and singing jams.




Maybe tomorrow, Augusta.

Monday, August 14, 2006

More updates

This is my young friend, Myra, whom I've known for several years.   She's an amazing Old-time and Irish fiddler.   This is just a teaser as I'm still working on some video clips for my 'Sense of the Hiatus' post.   Maybe tomorrow.

In the meantime, more updates.

James Dennis Berry, #28, of the Berry Plain Berrys has upgraded from 25 markers to Y-DNA67!   Thanks Dennis.   This could provide good benchmark information for that family.

50 of his 67 markers have now been returned for Scott Enfield Berry, #66, and are posted to the results page.   As I mentioned yesterday, no matches yet.

yAncestrys have been posted for Norman Berry, #74, and for Robert Leo Berry, #75.

Jim Berry's (#7) SNP results, reported yesterday, apparently indicate that the haplogroup of the Augusta/Washington Co. Berry family is I1a*.
Chart courtesy FTDNA

"The '*' means 'all known subclades of I1a test negative'....   'I1a*' would then be 'I1a but no known subclade of I1a'.   In contrast, simply saying 'I1a' means 'I1a and not tested any further'," says Glen Todd.

Sunday, August 13, 2006

Project update

Well, I'm back.   And, except for being seriously sleep deprived and a few pounds heavier, in reasonably good shape.

I want to give you a flavor of both Clifftop and the Augusta Heritage Program, but think I'll save that for a few days until we get a 'slow news day' and use today's post to bring you up to date on new Berry DNA events since August 1.

We have two new members, S. E. Berry, #76, who is our 80th member, and C. E. Berry, #77, our 81st member, both of whom have ordered Y-DNA37 tests.

Scott Enfield (#66) Berry's 37 marker results are back but, unfortunately, he doesn't match anyone who has already tested.   I was hopeful for the Augusta/Washington Berrys because the 'Enfield' name also shows up in that family, but I guess we'll have to find some other explanation for the like name usage.

Todd Andrew (#72) Berry's mitochondrial HVR1 & HVR2 results are back and he has a High Resolution match!   That would be pretty exciting!   What that means (I think) is that somewhere back in his matrilineal line he and the other person have a common female ancestor.   I don't think there's any way to tell how far back and it could be quite far.   Todd belongs mitochondrial haplogroup H.

Jim (#7) Berry's Ethnoancestry SNP test results were returned during my absence.   They are:
     M21 ancestral
     M227 ancestral
     M253 derived
     M72 ancestral
     P30 derived
     P38 derived
     P40 derived
Unfortunately, I don't know what they mean but I've posted an inquiry to the DNA list and expect to be able to tell you shortly.   I believe that they should have meaning to the entire Augusta/Washington Berry family.